Gene info for mRNA_5448 in Rhodosporidium toruloides IFO0880

Name: 13816
Annotation: BLAST GQ67_01206T0 [Komagataella phaffii]
Type 1: Protein-coding gene
Located on scaffold scaffold_5, + strand, nucleotides 116,614 to 117,202
See nucleotide sequence around mRNA_5448 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13811 and 13812 are separated by 188 nucleotides13812 and 13813 are separated by 1088 nucleotides13813 and 13814 are separated by 649 nucleotides13814 and 13815 are separated by 30 nucleotides13815 and 13816 are separated by 479 nucleotides13816 and 13817 are separated by 206 nucleotides13817 and 13818 are separated by 314 nucleotides13818 and 13819 are separated by 1187 nucleotides13819 and 13820 are separated by 486 nucleotides13820 and 13821 are separated by 787 nucleotides mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107,127 to 108,436 13811 mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108,625 to 109,612 13812 mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110,701 to 112,520 13813 mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689 13814 mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134 13815 mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116,614 to 117,202 13816 mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117,409 to 118,509 13817 mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118,824 to 121,253 13818 mRNA_5451: 13819 - Hypothetical Protein, at 122,441 to 123,785 13819 mRNA_5452: 13820 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 124,272 to 125,754 13820 mRNA_5453: 13821 - HMMPfam-Glutaredoxin-like domain (DUF836)-PF05768,SUPERFAMILY--SSF52833, at 126,542 to 126,978 13821
Locus Name Description Strand Phenotype
mRNA_5443 13811 KOG3085 Predicted hydrolase (HAD superfamily) + insig.
mRNA_5444 13812 HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665 - cofit
mRNA_5445 13813 K07513 ACAA1 acetyl-CoA acyltransferase 1 + strong
mRNA_5446 13814 HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909 + no data
mRNA_5447 13815 HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 - cofit
mRNA_5448 13816 BLAST GQ67_01206T0 [Komagataella phaffii] + cofit
mRNA_5449 13817 HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232 - cofit
mRNA_5450 13818 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) - cofit
mRNA_5451 13819 Hypothetical Protein + insig.
mRNA_5452 13820 HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630 + cofit
mRNA_5453 13821 HMMPfam-Glutaredoxin-like domain (DUF836)-PF05768,SUPERFAMILY--SSF52833 + no data

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