Gene info for mRNA_5505 in Rhodosporidium toruloides IFO0880

Name: 13873
Annotation: KOG0297 TNF receptor-associated factor
Type 1: Protein-coding gene
Located on scaffold scaffold_5, - strand, nucleotides 254,457 to 255,755
See nucleotide sequence around mRNA_5505 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13868 and 13869 are separated by 271 nucleotides13869 and 13870 are separated by 152 nucleotides13870 and 13871 are separated by 1005 nucleotides13871 and 13872 are separated by 454 nucleotides13872 and 13873 are separated by 355 nucleotides13873 and 13874 are separated by 1562 nucleotides13874 and 13875 are separated by 98 nucleotides13875 and 13876 are separated by 1289 nucleotides13876 and 13877 are separated by 456 nucleotides13877 and 13878 are separated by 735 nucleotides mRNA_5500: 13868 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 242,489 to 245,110 13868 mRNA_5501: 13869 - Hypothetical Protein, at 245,382 to 247,759 13869 mRNA_5502: 13870 - Hypothetical Protein, at 247,912 to 250,557 13870 mRNA_5503: 13871 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 251,563 to 253,057 13871 mRNA_5504: 13872 - KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU), at 253,512 to 254,101 13872 mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755 13873 mRNA_5506: 13874 - KOG2504 Monocarboxylate transporter, at 257,318 to 259,586 13874 mRNA_5507: 13875 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 259,685 to 261,151 13875 mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262,441 to 263,588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907 13877 mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265,643 to 266,758 13878
Locus Name Description Strand Phenotype
mRNA_5500 13868 HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,ProSiteProfiles-MATH/TRAF domain profile.-PS50144,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695 + insig.
mRNA_5501 13869 Hypothetical Protein - cofit
mRNA_5502 13870 Hypothetical Protein - insig.
mRNA_5503 13871 HMMPfam-Chitin synthase III catalytic subunit-PF12271 + cofit
mRNA_5504 13872 KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU) - no data
mRNA_5505 13873 KOG0297 TNF receptor-associated factor - cofit
mRNA_5506 13874 KOG2504 Monocarboxylate transporter + cofit
mRNA_5507 13875 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase - cofit
mRNA_5508 13876 KOG0297 TNF receptor-associated factor + insig.
mRNA_5509 13877 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 + cofit
mRNA_5510 13878 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 + cofit

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