Gene info for mRNA_5510 in Rhodosporidium toruloides IFO0880

Name: 13878
Annotation: ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850
Type 1: Protein-coding gene
Located on scaffold scaffold_5, + strand, nucleotides 265,643 to 266,758
See nucleotide sequence around mRNA_5510 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13873 and 13874 are separated by 1562 nucleotides13874 and 13875 are separated by 98 nucleotides13875 and 13876 are separated by 1289 nucleotides13876 and 13877 are separated by 456 nucleotides13877 and 13878 are separated by 735 nucleotides13878 and 13879 are separated by 616 nucleotides13879 and 13880 are separated by 456 nucleotides13880 and 13881 are separated by 531 nucleotides13881 and 13882 are separated by 122 nucleotides13882 and 13883 are separated by 377 nucleotides mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755 13873 mRNA_5506: 13874 - KOG2504 Monocarboxylate transporter, at 257,318 to 259,586 13874 mRNA_5507: 13875 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 259,685 to 261,151 13875 mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262,441 to 263,588 13876 mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264,045 to 264,907 13877 mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265,643 to 266,758 13878 mRNA_5511: 13879 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 267,375 to 268,513 13879 mRNA_5512: 13880 - HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631, at 268,970 to 271,571 13880 mRNA_5513: 13881 - KOG4178 Soluble epoxide hydrolase, at 272,103 to 273,154 13881 mRNA_5514: 13882 - K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12, at 273,277 to 274,802 13882 mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275,180 to 276,108 13883
Locus Name Description Strand Phenotype
mRNA_5505 13873 KOG0297 TNF receptor-associated factor - cofit
mRNA_5506 13874 KOG2504 Monocarboxylate transporter + cofit
mRNA_5507 13875 KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase - cofit
mRNA_5508 13876 KOG0297 TNF receptor-associated factor + insig.
mRNA_5509 13877 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 + cofit
mRNA_5510 13878 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 + cofit
mRNA_5511 13879 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 + cofit
mRNA_5512 13880 HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631 + no data
mRNA_5513 13881 KOG4178 Soluble epoxide hydrolase + insig.
mRNA_5514 13882 K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12 - no data
mRNA_5515 13883 K02738 PSMB6 20S proteasome subunit beta 1 + no data

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