Gene info for mRNA_5517 in Rhodosporidium toruloides IFO0880

Name: 13885
Annotation: PRINTS-Proline rich extensin signature-PR01217
Type 1: Protein-coding gene
Located on scaffold scaffold_5, + strand, nucleotides 280,339 to 282,741
See nucleotide sequence around mRNA_5517 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13880 and 13881 are separated by 531 nucleotides13881 and 13882 are separated by 122 nucleotides13882 and 13883 are separated by 377 nucleotides13883 and 13884 are separated by 155 nucleotides13884 and 13885 are separated by 2864 nucleotides13885 and 13886 are separated by 4750 nucleotides13886 and 13887 are separated by 666 nucleotides13887 and 13888 are separated by 464 nucleotides13888 and 13889 are separated by 482 nucleotides13889 and 13890 are separated by 489 nucleotides mRNA_5512: 13880 - HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631, at 268,970 to 271,571 13880 mRNA_5513: 13881 - KOG4178 Soluble epoxide hydrolase, at 272,103 to 273,154 13881 mRNA_5514: 13882 - K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12, at 273,277 to 274,802 13882 mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275,180 to 276,108 13883 mRNA_5516: 13884 - Hypothetical Protein, at 276,264 to 277,474 13884 mRNA_5517: 13885 - PRINTS-Proline rich extensin signature-PR01217, at 280,339 to 282,741 13885 mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287,492 to 288,002 13886 mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288,669 to 289,832 13887 mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290,297 to 291,417 13888 mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291,900 to 293,030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293,520 to 294,673 13890
Locus Name Description Strand Phenotype
mRNA_5512 13880 HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631 + no data
mRNA_5513 13881 KOG4178 Soluble epoxide hydrolase + insig.
mRNA_5514 13882 K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12 - no data
mRNA_5515 13883 K02738 PSMB6 20S proteasome subunit beta 1 + no data
mRNA_5516 13884 Hypothetical Protein - cofit
mRNA_5517 13885 PRINTS-Proline rich extensin signature-PR01217 + cofit
mRNA_5518 13886 SUPERFAMILY--SSF49599 - cofit
mRNA_5519 13887 HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145 - cofit
mRNA_5520 13888 KOG0297 TNF receptor-associated factor - cofit
mRNA_5521 13889 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 - cofit
mRNA_5522 13890 ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145 - insig.

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