Gene info for mRNA_5519 in Rhodosporidium toruloides IFO0880

Name: 13887
Annotation: HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145
Type 1: Protein-coding gene
Located on scaffold scaffold_5, - strand, nucleotides 288,669 to 289,832
See nucleotide sequence around mRNA_5519 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13882 and 13883 are separated by 377 nucleotides13883 and 13884 are separated by 155 nucleotides13884 and 13885 are separated by 2864 nucleotides13885 and 13886 are separated by 4750 nucleotides13886 and 13887 are separated by 666 nucleotides13887 and 13888 are separated by 464 nucleotides13888 and 13889 are separated by 482 nucleotides13889 and 13890 are separated by 489 nucleotides13890 and 13891 are separated by 484 nucleotides13891 and 13892 are separated by 844 nucleotides mRNA_5514: 13882 - K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12, at 273,277 to 274,802 13882 mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275,180 to 276,108 13883 mRNA_5516: 13884 - Hypothetical Protein, at 276,264 to 277,474 13884 mRNA_5517: 13885 - PRINTS-Proline rich extensin signature-PR01217, at 280,339 to 282,741 13885 mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287,492 to 288,002 13886 mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288,669 to 289,832 13887 mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290,297 to 291,417 13888 mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291,900 to 293,030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293,520 to 294,673 13890 mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295,158 to 296,227 13891 mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297,072 to 298,317 13892
Locus Name Description Strand Phenotype
mRNA_5514 13882 K03031 PSMD8, RPN12 26S proteasome regulatory subunit N12 - no data
mRNA_5515 13883 K02738 PSMB6 20S proteasome subunit beta 1 + no data
mRNA_5516 13884 Hypothetical Protein - cofit
mRNA_5517 13885 PRINTS-Proline rich extensin signature-PR01217 + cofit
mRNA_5518 13886 SUPERFAMILY--SSF49599 - cofit
mRNA_5519 13887 HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145 - cofit
mRNA_5520 13888 KOG0297 TNF receptor-associated factor - cofit
mRNA_5521 13889 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850 - cofit
mRNA_5522 13890 ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145 - insig.
mRNA_5523 13891 ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850 - cofit
mRNA_5524 13892 KOG3002 Zn finger protein - cofit

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