Gene info for mRNA_5581 in Rhodosporidium toruloides IFO0880

Name: 13949
Annotation: KOG1198 Zinc-binding oxidoreductase
Type 1: Protein-coding gene
Located on scaffold scaffold_5, + strand, nucleotides 426,490 to 430,753
See nucleotide sequence around mRNA_5581 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13944 and 13945 are separated by 616 nucleotides13945 and 13946 are separated by 396 nucleotides13946 and 13947 are separated by 1210 nucleotides13947 and 13948 are separated by 791 nucleotides13948 and 13949 are separated by 760 nucleotides13949 and 13950 are separated by 366 nucleotides13950 and 13951 are separated by 448 nucleotides13951 and 13952 are separated by 117 nucleotides13952 and 13953 are separated by 769 nucleotides13953 and 13954 are separated by 1032 nucleotides mRNA_5576: 13944 - Interpro GDP-fucose protein O-fucosyltransferase, at 415,685 to 417,537 13944 mRNA_5577: 13945 - Hypothetical Protein, at 418,154 to 419,235 13945 mRNA_5578: 13946 - HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095, at 419,632 to 421,061 13946 mRNA_5579: 13947 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 422,272 to 423,518 13947 mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424,310 to 425,729 13948 mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426,490 to 430,753 13949 mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431,120 to 432,974 13950 mRNA_5583: 13951 - BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi..., at 433,423 to 434,660 13951 mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176 13952 mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812 13953 mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440,845 to 442,225 13954
Locus Name Description Strand Phenotype
mRNA_5576 13944 Interpro GDP-fucose protein O-fucosyltransferase + cofit
mRNA_5577 13945 Hypothetical Protein - cofit
mRNA_5578 13946 HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095 + no data
mRNA_5579 13947 HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735 + cofit
mRNA_5580 13948 K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit + no data
mRNA_5581 13949 KOG1198 Zinc-binding oxidoreductase + cofit
mRNA_5582 13950 KOG0254 Predicted transporter (major facilitator superfamily) - cofit
mRNA_5583 13951 BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi... + no data
mRNA_5584 13952 K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1 + no data
mRNA_5585 13953 HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277 + cofit
mRNA_5586 13954 HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874 + cofit

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