Gene info for mRNA_5585 in Rhodosporidium toruloides IFO0880

Name: 13953
Annotation: HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277
Type 1: Protein-coding gene
Located on scaffold scaffold_5, + strand, nucleotides 438,946 to 439,812
See nucleotide sequence around mRNA_5585 or for all of scaffold scaffold_5

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 13948 and 13949 are separated by 760 nucleotides13949 and 13950 are separated by 366 nucleotides13950 and 13951 are separated by 448 nucleotides13951 and 13952 are separated by 117 nucleotides13952 and 13953 are separated by 769 nucleotides13953 and 13954 are separated by 1032 nucleotides13954 and 13955 are separated by 234 nucleotides13955 and 13956 are separated by 410 nucleotides13956 and 13957 are separated by 1620 nucleotides13957 and 13958 are separated by 116 nucleotides mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424,310 to 425,729 13948 mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426,490 to 430,753 13949 mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431,120 to 432,974 13950 mRNA_5583: 13951 - BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi..., at 433,423 to 434,660 13951 mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176 13952 mRNA_5585: 13953 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 438,946 to 439,812 13953 mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440,845 to 442,225 13954 mRNA_5587: 13955 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 442,460 to 444,934 13955 mRNA_5588: 13956 - K04646 CLTC clathrin heavy chain, at 445,345 to 451,026 13956 mRNA_5589: 13957 - HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371, at 452,647 to 453,380 13957 mRNA_5590: 13958 - K11137 TELO2, TEL2 telomere length regulation protein, at 453,497 to 457,057 13958
Locus Name Description Strand Phenotype
mRNA_5580 13948 K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit + no data
mRNA_5581 13949 KOG1198 Zinc-binding oxidoreductase + cofit
mRNA_5582 13950 KOG0254 Predicted transporter (major facilitator superfamily) - cofit
mRNA_5583 13951 BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi... + no data
mRNA_5584 13952 K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1 + no data
mRNA_5585 13953 HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277 + cofit
mRNA_5586 13954 HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874 + cofit
mRNA_5587 13955 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) + cofit
mRNA_5588 13956 K04646 CLTC clathrin heavy chain + no data
mRNA_5589 13957 HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371 + cofit
mRNA_5590 13958 K11137 TELO2, TEL2 telomere length regulation protein - no data

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