Gene info for mRNA_6257 in Rhodosporidium toruloides IFO0880

Name: 14625
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701
Type 1: Protein-coding gene
Located on scaffold scaffold_6, + strand, nucleotides 368,702 to 371,060
See nucleotide sequence around mRNA_6257 or for all of scaffold scaffold_6

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 14620 and 14621 are separated by 1016 nucleotides14621 and 14622 are separated by 401 nucleotides14622 and 14623 are separated by 174 nucleotides14623 and 14624 are separated by 547 nucleotides14624 and 14625 are separated by 257 nucleotides14625 and 14626 are separated by 842 nucleotides14626 and 14627 are separated by 517 nucleotides14627 and 14628 are separated by 463 nucleotides14628 and 14629 are separated by 1234 nucleotides14629 and 14630 are separated by 464 nucleotides mRNA_6252: 14620 - K10845 TTDA, GTF2H5, TFB5 TFIIH basal transcription factor complex TTD-A subunit, at 358,832 to 359,230 14620 mRNA_6253: 14621 - HMMPfam-FR47-like protein-PF08445,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 360,247 to 361,370 14621 mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361,772 to 365,441 14622 mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365,616 to 367,386 14623 mRNA_6256: 14624 - Hypothetical Protein, at 367,934 to 368,444 14624 mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368,702 to 371,060 14625 mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371,903 to 374,480 14626 mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374,998 to 377,098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377,562 to 381,779 14628 mRNA_6261: 14629 - K09274 K09274 HMG box factor, other, at 383,014 to 384,624 14629 mRNA_6262: 14630 - SMART-Gelsolin homology domain-SM00262,SUPERFAMILY--SSF55753, at 385,089 to 388,417 14630
Locus Name Description Strand Phenotype
mRNA_6252 14620 K10845 TTDA, GTF2H5, TFB5 TFIIH basal transcription factor complex TTD-A subunit - no data
mRNA_6253 14621 HMMPfam-FR47-like protein-PF08445,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729 + cofit
mRNA_6254 14622 K20477 RGP1 RAB6A-GEF complex partner protein 2 + strong
mRNA_6255 14623 K01452 E3.5.1.41 chitin deacetylase - cofit
mRNA_6256 14624 Hypothetical Protein + cofit
mRNA_6257 14625 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 + cofit
mRNA_6258 14626 K01687 ilvD dihydroxy-acid dehydratase - insig.
mRNA_6259 14627 HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713 + cofit
mRNA_6260 14628 HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631 - cofit
mRNA_6261 14629 K09274 K09274 HMG box factor, other + cofit
mRNA_6262 14630 SMART-Gelsolin homology domain-SM00262,SUPERFAMILY--SSF55753 - cofit

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