Gene info for mRNA_6661 in Rhodosporidium toruloides IFO0880

Name: 15029
Annotation: K11699 RDR, RDRP RNA-dependent RNA polymerase
Type 1: Protein-coding gene
Located on scaffold scaffold_6, - strand, nucleotides 1,375,555 to 1,377,901
See nucleotide sequence around mRNA_6661 or for all of scaffold scaffold_6

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 15024 and 15025 are separated by 1056 nucleotides15025 and 15026 are separated by 160 nucleotides15026 and 15027 are separated by 285 nucleotides15027 and 15028 are separated by 691 nucleotides15028 and 15029 are separated by 69 nucleotides15029 and 15030 are separated by 1441 nucleotides15030 and 15031 are separated by 456 nucleotides15031 and 15032 are separated by 186 nucleotides15032 and 15033 are separated by 1250 nucleotides15033 and 15034 are separated by 228 nucleotides mRNA_6656: 15024 - KOG1674 Cyclin, at 1,360,120 to 1,362,447 15024 mRNA_6657: 15025 - K16302 CNNM metal transporter CNNM, at 1,363,504 to 1,366,738 15025 mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407 15026 mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174 15027 mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901 15029 mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1,379,343 to 1,382,272 15030 mRNA_6663: 15031 - Hypothetical Protein, at 1,382,729 to 1,383,844 15031 mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1,384,031 to 1,388,134 15032 mRNA_6665: 15033 - K01952 purL, PFAS phosphoribosylformylglycinamidine synthase, at 1,389,385 to 1,393,556 15033 mRNA_6666: 15034 - K18423 CSE1, CAS, XPO2 exportin-2 (importin alpha re-exporter), at 1,393,785 to 1,397,625 15034
Locus Name Description Strand Phenotype
mRNA_6656 15024 KOG1674 Cyclin - cofit
mRNA_6657 15025 K16302 CNNM metal transporter CNNM - cofit
mRNA_6658 15026 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 - cofit
mRNA_6659 15027 K05663 ABC.ATM mitochondrial ABC transporter ATM - no data
mRNA_6660 15028 KOG1342 Histone deacetylase complex, catalytic component RPD3 + cofit
mRNA_6661 15029 K11699 RDR, RDRP RNA-dependent RNA polymerase - insig.
mRNA_6662 15030 HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928 - insig.
mRNA_6663 15031 Hypothetical Protein + cofit
mRNA_6664 15032 K03165 TOP3 DNA topoisomerase III - insig.
mRNA_6665 15033 K01952 purL, PFAS phosphoribosylformylglycinamidine synthase + insig.
mRNA_6666 15034 K18423 CSE1, CAS, XPO2 exportin-2 (importin alpha re-exporter) - no data

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