Gene info for mRNA_7178 in Rhodosporidium toruloides IFO0880

Name: 15546
Annotation: KOG0417 Ubiquitin-protein ligase
Type 1: Protein-coding gene
Located on scaffold scaffold_7, - strand, nucleotides 1,058,838 to 1,059,935
See nucleotide sequence around mRNA_7178 or for all of scaffold scaffold_7

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 15541 and 15542 are separated by 392 nucleotides15542 and 15543 are separated by 419 nucleotides15543 and 15544 are separated by 220 nucleotides15544 and 15545 are separated by 284 nucleotides15545 and 15546 are separated by 172 nucleotides15546 and 15547 are separated by 404 nucleotides15547 and 15548 are separated by 829 nucleotides15548 and 15549 are separated by 495 nucleotides15549 and 15550 are separated by 251 nucleotides15550 and 15551 are separated by 1117 nucleotides mRNA_7173: 15541 - K02891 RP-L22e, RPL22 large subunit ribosomal protein L22e, at 1,049,692 to 1,050,738 15541 mRNA_7174: 15542 - K11131 DKC1, NOLA4, CBF5 H/ACA ribonucleoprotein complex subunit 4, at 1,051,131 to 1,053,156 15542 mRNA_7175: 15543 - K12272 SRPRB, SRP102 signal recognition particle receptor subunit beta, at 1,053,576 to 1,055,087 15543 mRNA_7176: 15544 - KOG4635 Vacuolar import and degradation protein, at 1,055,308 to 1,056,885 15544 mRNA_7177: 15545 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 1,057,170 to 1,058,665 15545 mRNA_7178: 15546 - KOG0417 Ubiquitin-protein ligase, at 1,058,838 to 1,059,935 15546 mRNA_7179: 15547 - Hypothetical Protein, at 1,060,340 to 1,061,881 15547 mRNA_7180: 15548 - Hypothetical Protein, at 1,062,711 to 1,064,267 15548 mRNA_7181: 15549 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,064,763 to 1,065,253 15549 mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037 15550 mRNA_7183: 15551 - Hypothetical Protein, at 1,068,155 to 1,071,791 15551
Locus Name Description Strand Phenotype
mRNA_7173 15541 K02891 RP-L22e, RPL22 large subunit ribosomal protein L22e - no data
mRNA_7174 15542 K11131 DKC1, NOLA4, CBF5 H/ACA ribonucleoprotein complex subunit 4 + no data
mRNA_7175 15543 K12272 SRPRB, SRP102 signal recognition particle receptor subunit beta + no data
mRNA_7176 15544 KOG4635 Vacuolar import and degradation protein + cofit
mRNA_7177 15545 KOG0565 Inositol polyphosphate 5-phosphatase and related proteins + cofit
mRNA_7178 15546 KOG0417 Ubiquitin-protein ligase - cofit
mRNA_7179 15547 Hypothetical Protein + insig.
mRNA_7180 15548 Hypothetical Protein + cofit
mRNA_7181 15549 BLAST expressed protein [Cryptococcus neoformans var. neofo... + cofit
mRNA_7182 15550 HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978 - cofit
mRNA_7183 15551 Hypothetical Protein - insig.

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