Gene info for mRNA_7399 in Rhodosporidium toruloides IFO0880

Name: 15767
Annotation: K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family
Type 1: Protein-coding gene
Located on scaffold scaffold_8, + strand, nucleotides 186,172 to 187,240
See nucleotide sequence around mRNA_7399 or for all of scaffold scaffold_8

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 15762 and 15763 are separated by 238 nucleotides15763 and 15764 are separated by 434 nucleotides15764 and 15765 are separated by 191 nucleotides15765 and 15766 are separated by 483 nucleotides15766 and 15767 are separated by 283 nucleotides15767 and 15768 are separated by 163 nucleotides15768 and 15769 are separated by 478 nucleotides15769 and 15770 are separated by 132 nucleotides15770 and 15771 are separated by 721 nucleotides15771 and 15772 are separated by 208 nucleotides mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175,289 to 177,598 15762 mRNA_7395: 15763 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 177,837 to 178,751 15763 mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179,186 to 180,946 15764 mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181,138 to 183,665 15765 mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184,149 to 185,888 15766 mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186,172 to 187,240 15767 mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187,404 to 189,530 15768 mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190,009 to 193,201 15769 mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193,334 to 195,902 15770 mRNA_7403: 15771 - Hypothetical Protein, at 196,624 to 197,387 15771 mRNA_7404: 15772 - HMMPfam-Protein of unknown function (DUF2470)-PF10615, at 197,596 to 198,665 15772
Locus Name Description Strand Phenotype
mRNA_7394 15762 KOG0569 Permease of the major facilitator superfamily - cofit
mRNA_7395 15763 HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786 - cofit
mRNA_7396 15764 K18584 ACTR3, ARP3 actin-related protein 3 + cofit
mRNA_7397 15765 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + cofit
mRNA_7398 15766 KOG0266 WD40 repeat-containing protein - cofit
mRNA_7399 15767 K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family + no data
mRNA_7400 15768 K08075 E3.1.3.32 polynucleotide 3'-phosphatase - insig.
mRNA_7401 15769 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 + cofit
mRNA_7402 15770 HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870 - cofit
mRNA_7403 15771 Hypothetical Protein - no data
mRNA_7404 15772 HMMPfam-Protein of unknown function (DUF2470)-PF10615 - cofit

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