Gene info for mRNA_8017 in Rhodosporidium toruloides IFO0880

Name: 16385
Annotation: K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1
Type 1: Protein-coding gene
Located on scaffold scaffold_9, - strand, nucleotides 218,888 to 219,506
See nucleotide sequence around mRNA_8017 or for all of scaffold scaffold_9

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 16380 and 16381 are separated by 460 nucleotides16381 and 16382 are separated by 312 nucleotides16382 and 16383 are separated by 301 nucleotides16383 and 16384 are separated by 195 nucleotides16384 and 16385 are separated by 369 nucleotides16385 and 16386 are separated by 911 nucleotides16386 and 16387 are separated by 1896 nucleotides16387 and 16388 are separated by 183 nucleotides16388 and 16389 are separated by 82 nucleotides16389 and 16390 are separated by 111 nucleotides mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209,272 to 211,609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212,070 to 213,325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213,638 to 214,851 16382 mRNA_8015: 16383 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 215,153 to 216,105 16383 mRNA_8016: 16384 - K11968 ARIH1 ariadne-1, at 216,301 to 218,518 16384 mRNA_8017: 16385 - K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1, at 218,888 to 219,506 16385 mRNA_8018: 16386 - Hypothetical Protein, at 220,418 to 221,008 16386 mRNA_8019: 16387 - Hypothetical Protein, at 222,905 to 224,449 16387 mRNA_8020: 16388 - K19841 STE50 protein STE50, at 224,633 to 227,369 16388 mRNA_8021: 16389 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51905, at 227,452 to 229,516 16389 mRNA_8022: 16390 - BLAST Ubiquinone biosynthesis protein coq9, mitochondrial [..., at 229,628 to 230,640 16390
Locus Name Description Strand Phenotype
mRNA_8012 16380 HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928 + cofit
mRNA_8013 16381 SUPERFAMILY--SSF58113 + strong
mRNA_8014 16382 HMMPfam-Protein of unknown function (DUF1769)-PF08588 + cofit
mRNA_8015 16383 HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232 + cofit
mRNA_8016 16384 K11968 ARIH1 ariadne-1 - no data
mRNA_8017 16385 K11087 SNRPD1, SMD1 small nuclear ribonucleoprotein D1 - no data
mRNA_8018 16386 Hypothetical Protein - cofit
mRNA_8019 16387 Hypothetical Protein - cofit
mRNA_8020 16388 K19841 STE50 protein STE50 + cofit
mRNA_8021 16389 HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51905 - insig.
mRNA_8022 16390 BLAST Ubiquinone biosynthesis protein coq9, mitochondrial [... + no data

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