Gene info for mRNA_102 in Rhodosporidium toruloides IFO0880

Name: 8470
Annotation: HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679
Type 1: Protein-coding gene
Located on scaffold scaffold_1, + strand, nucleotides 247,531 to 248,783
See nucleotide sequence around mRNA_102 or for all of scaffold scaffold_1

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 8465 and 8466 are separated by 706 nucleotides8466 and 8467 are separated by 934 nucleotides8467 and 8468 are separated by 682 nucleotides8468 and 8469 are separated by 605 nucleotides8469 and 8470 are separated by 663 nucleotides8470 and 8471 are separated by 121 nucleotides8471 and 8472 are separated by 363 nucleotides8472 and 8473 are separated by 15 nucleotides8473 and 8474 are separated by 377 nucleotides8474 and 8475 are separated by 276 nucleotides mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229,785 to 233,167 8465 mRNA_98: 8466 - Hypothetical Protein, at 233,874 to 234,659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235,594 to 240,654 8467 mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241,337 to 243,142 8468 mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243,748 to 246,867 8469 mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247,531 to 248,783 8470 mRNA_103: 8471 - Hypothetical Protein, at 248,905 to 249,863 8471 mRNA_104: 8472 - Hypothetical Protein, at 250,227 to 251,681 8472 mRNA_105: 8473 - K08504 BET1 blocked early in transport 1, at 251,697 to 252,245 8473 mRNA_106: 8474 - K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4), at 252,623 to 256,756 8474 mRNA_107: 8475 - K08592 SENP1 sentrin-specific protease 1, at 257,033 to 257,891 8475
Locus Name Description Strand Phenotype
mRNA_97 8465 KOG2234 Predicted UDP-galactose transporter - cofit
mRNA_98 8466 Hypothetical Protein - insig.
mRNA_99 8467 HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180 + cofit
mRNA_100 8468 K03686 dnaJ molecular chaperone DnaJ - no data
mRNA_101 8469 K18719 NUP82 nucleoporin NUP82 + no data
mRNA_102 8470 HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679 + cofit
mRNA_103 8471 Hypothetical Protein - cofit
mRNA_104 8472 Hypothetical Protein - cofit
mRNA_105 8473 K08504 BET1 blocked early in transport 1 - no data
mRNA_106 8474 K15201 GTP3C3, TFC4 general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) + no data
mRNA_107 8475 K08592 SENP1 sentrin-specific protease 1 - no data

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