Gene info for mRNA_273 in Rhodosporidium toruloides IFO0880

Name: 8641
Annotation: K15174 PAF1 RNA polymerase II-associated factor 1
Type 1: Protein-coding gene
Located on scaffold scaffold_1, + strand, nucleotides 655,778 to 657,591
See nucleotide sequence around mRNA_273 or for all of scaffold scaffold_1

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 8636 and 8637 are separated by 129 nucleotides8637 and 8638 are separated by 272 nucleotides8638 and 8639 are separated by 317 nucleotides8639 and 8640 are separated by 531 nucleotides8640 and 8641 are separated by 380 nucleotides8641 and 8642 are separated by 71 nucleotides8642 and 8643 are separated by 1111 nucleotides8643 and 8644 are separated by 230 nucleotides8644 and 8645 are separated by 1091 nucleotides8645 and 8646 are separated by 257 nucleotides mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642,489 to 643,919 8636 mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644,049 to 645,349 8637 mRNA_270: 8638 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 645,622 to 646,120 8638 mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646,438 to 653,784 8639 mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654,316 to 655,397 8640 mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655,778 to 657,591 8641 mRNA_274: 8642 - BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena], at 657,663 to 658,330 8642 mRNA_275: 8643 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 659,442 to 660,346 8643 mRNA_276: 8644 - K03679 RRP4, EXOSC2 exosome complex component RRP4, at 660,577 to 661,885 8644 mRNA_277: 8645 - KOG3122 DNA-directed RNA polymerase III subunit, at 662,977 to 664,495 8645 mRNA_278: 8646 - K03134 TAF10 transcription initiation factor TFIID subunit 10, at 664,753 to 665,683 8646
Locus Name Description Strand Phenotype
mRNA_268 8636 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 + insig.
mRNA_269 8637 BLAST nitrogen assimilation transcription factor [Rhodo... + cofit
mRNA_270 8638 BLAST protein of unknown function [Taphrina deformans PYCC ... - no data
mRNA_271 8639 K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1 - no data
mRNA_272 8640 KOG4178 Soluble epoxide hydrolase - cofit
mRNA_273 8641 K15174 PAF1 RNA polymerase II-associated factor 1 + cofit
mRNA_274 8642 BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena] + cofit
mRNA_275 8643 BLAST nitrogen assimilation transcription factor [Rhodo... - cofit
mRNA_276 8644 K03679 RRP4, EXOSC2 exosome complex component RRP4 - no data
mRNA_277 8645 KOG3122 DNA-directed RNA polymerase III subunit + no data
mRNA_278 8646 K03134 TAF10 transcription initiation factor TFIID subunit 10 - no data

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