Gene info for mRNA_562 in Rhodosporidium toruloides IFO0880

Name: 8930
Annotation: HMMPfam-HPC2 and ubinuclein domain-PF08729
Type 1: Protein-coding gene
Located on scaffold scaffold_1, + strand, nucleotides 1,346,639 to 1,349,486
See nucleotide sequence around mRNA_562 or for all of scaffold scaffold_1

Other databases: MicrobesOnline, NCBI

Nearby Genes

500 nt 8925 and 8926 are separated by 834 nucleotides8926 and 8927 are separated by 645 nucleotides8927 and 8928 are separated by 1430 nucleotides8928 and 8929 are separated by 355 nucleotides8929 and 8930 are separated by 539 nucleotides8930 and 8931 are separated by 198 nucleotides8931 and 8932 are separated by 88 nucleotides8932 and 8933 are separated by 110 nucleotides8933 and 8934 are separated by 117 nucleotides8934 and 8935 are separated by 270 nucleotides mRNA_557: 8925 - HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236, at 1,324,650 to 1,329,010 8925 mRNA_558: 8926 - HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 1,329,845 to 1,332,752 8926 mRNA_559: 8927 - KOG4672 Uncharacterized conserved low complexity protein, at 1,333,398 to 1,335,053 8927 mRNA_560: 8928 - Hypothetical Protein, at 1,336,484 to 1,340,949 8928 mRNA_561: 8929 - Hypothetical Protein, at 1,341,305 to 1,346,099 8929 mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1,346,639 to 1,349,486 8930 mRNA_563: 8931 - K05287 PIGF phosphatidylinositol glycan, class F, at 1,349,685 to 1,350,957 8931 mRNA_564: 8932 - K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase, at 1,351,046 to 1,353,534 8932 mRNA_565: 8933 - K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit, at 1,353,645 to 1,355,726 8933 mRNA_566: 8934 - HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464, at 1,355,844 to 1,356,185 8934 mRNA_567: 8935 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,356,456 to 1,359,397 8935
Locus Name Description Strand Phenotype
mRNA_557 8925 HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236 - cofit
mRNA_558 8926 HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044 - no data
mRNA_559 8927 KOG4672 Uncharacterized conserved low complexity protein + cofit
mRNA_560 8928 Hypothetical Protein - insig.
mRNA_561 8929 Hypothetical Protein - cofit
mRNA_562 8930 HMMPfam-HPC2 and ubinuclein domain-PF08729 + insig.
mRNA_563 8931 K05287 PIGF phosphatidylinositol glycan, class F + cofit
mRNA_564 8932 K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase - cofit
mRNA_565 8933 K03256 TRM6, GCD10 tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit + no data
mRNA_566 8934 HMMPfam-Oligosaccaryltransferase-PF10215,SUPERFAMILY--SSF103464 - cofit
mRNA_567 8935 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 + cofit

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