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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10001 and 10002 are separated by 179 nucleotides
10002 and 10003 are separated by 1003 nucleotides
10003 and 10004 are separated by 263 nucleotides
10004 and 10005 are separated by 182 nucleotides
mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762,446 to 764,135
10001
mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes G-D-X-G family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764,315 to 766,210
10002
mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767,214 to 771,755
10003
mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772,019 to 773,712
10004
mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773,895 to 775,574
10005
Group
Condition
mRNA
_1633
mRNA
_1634
mRNA
_1635
mRNA
_1636
mRNA
_1637
10001
10002
10003
10004
10005
growth on oleic acid
YNB Oleic Acid
-0.8
-0.1
-0.3
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.0
-0.4
-0.3
-0.3
growth on oleic acid
YNB Glucose
-0.7
-0.0
-0.4
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.1
-0.7
-0.0
+0.1
auxotrophy
Dropout Complete
-0.4
+0.1
-0.7
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
-0.5
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.4
-0.7
-0.1
+0.3
growth on ypd
YPD
-0.7
-0.4
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose
-0.2
+0.1
-0.5
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.3
-1.3
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.6
+0.1
-0.4
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
-0.6
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.4
+0.0
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.5
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.5
+0.2
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.5
+0.1
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.5
-1.6
-0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
-0.5
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.0
-0.0
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.1
+0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.2
-0.3
+0.1
+0.2
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