Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10001 and 10002 are separated by 179 nucleotides10002 and 10003 are separated by 1003 nucleotides10003 and 10004 are separated by 263 nucleotides10004 and 10005 are separated by 182 nucleotides mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762,446 to 764,135 10001 mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes G-D-X-G family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764,315 to 766,210 10002 mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767,214 to 771,755 10003 mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772,019 to 773,712 10004 mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773,895 to 775,574 10005
Group Condition mRNA_1633 mRNA_1634 mRNA_1635 mRNA_1636 mRNA_1637
10001 10002 10003 10004 10005
growth on oleic acid YNB Oleic Acid -0.8 -0.1 -0.3 -0.4 -0.4
auxotrophy YNB Glucose 75mM Arginine -0.7 -0.0 -0.4 -0.3 -0.3
growth on oleic acid YNB Glucose -0.7 -0.0 -0.4 -0.2 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.5 -0.1 -0.7 -0.0 +0.1
auxotrophy Dropout Complete -0.4 +0.1 -0.7 -0.3 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.4 -0.2 -0.5 -0.2 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 -0.4 -0.7 -0.1 +0.3
growth on ypd YPD -0.7 -0.4 -0.0 +0.1 -0.1
auxotrophy YNB Glucose -0.2 +0.1 -0.5 -0.2 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.6 +0.3 -1.3 +0.1 -0.2
growth on ricinoleic acid YNB Glucose -0.6 +0.1 -0.4 -0.1 +0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 -0.1 -0.6 +0.0 +0.4
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.4 +0.0 +0.1 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.5 -0.2 -0.1 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.6 +0.5 +0.2 +0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.5 +0.1 +0.3 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +1.5 -1.6 -0.1 +0.4 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.2 -0.5 +0.1 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.5 +0.0 -0.0 -0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.5 -0.1 +0.2 +0.0 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.7 +0.2 -0.3 +0.1 +0.2
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