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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10003 and 10004 are separated by 263 nucleotides
10004 and 10005 are separated by 182 nucleotides
10005 and 10006 are separated by 816 nucleotides
10006 and 10007 are separated by 495 nucleotides
mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767,214 to 771,755
10003
mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772,019 to 773,712
10004
mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773,895 to 775,574
10005
mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776,391 to 779,009
10006
mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779,505 to 783,057
10007
Group
Condition
mRNA
_1635
mRNA
_1636
mRNA
_1637
mRNA
_1638
mRNA
_1639
10003
10004
10005
10006
10007
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
-0.4
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
+0.1
-0.2
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.2
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.7
-0.3
+0.1
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.3
-0.3
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.2
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.0
+0.1
+0.3
N.D.
auxotrophy
YNB Glucose
-0.5
-0.2
+0.2
+0.2
N.D.
growth on ypd
YPD
-0.0
+0.1
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.0
+0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.1
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.4
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.5
+0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.2
+0.1
N.D.
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