Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10006 and 10007 are separated by 495 nucleotides10007 and 10008 are separated by 716 nucleotides10008 and 10009 are separated by 473 nucleotides10009 and 10010 are separated by 607 nucleotides mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776,391 to 779,009 10006 mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779,505 to 783,057 10007 mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783,774 to 785,106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785,580 to 788,144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788,752 to 789,941 10010
Group Condition mRNA_1638 mRNA_1639 mRNA_1640 mRNA_1641 mRNA_1642
10006 10007 10008 10009 10010
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 N.D. -0.2 -0.2 -1.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 N.D. +0.2 -0.7 -1.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 N.D. -0.2 -0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 N.D. +0.1 -0.3 -0.9
growth on oleic acid YNB Oleic Acid -0.1 N.D. +0.2 -0.3 -0.5
auxotrophy Dropout Complete +0.1 N.D. +0.0 -0.8 -0.0
growth on ypd YPD -0.3 N.D. +0.0 -0.3 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 N.D. +0.3 -0.6 -0.3
ypd buoyancy 40 hrs Low Buoyancy +0.2 N.D. -0.1 -0.2 -0.3
growth on oleic acid YNB Glucose -0.1 N.D. +0.2 -0.2 -0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.1 N.D. -0.3 +0.0 +0.0
auxotrophy YNB Glucose +0.2 N.D. +0.2 -0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.2 N.D. -0.4 +0.3 +0.3
auxotrophy YNB Glucose 75mM Arginine +0.3 N.D. +0.3 -0.6 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 N.D. +0.4 -0.4 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 N.D. +0.2 -0.1 +0.1
growth on ricinoleic acid YNB Glucose +0.4 N.D. +0.2 -0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 N.D. -0.2 +0.0 +0.2
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. +0.1 +0.1 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.2 N.D. +0.0 +0.1 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 N.D. +0.3 -0.5 +1.1
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