Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10008 and 10009 are separated by 473 nucleotides10009 and 10010 are separated by 607 nucleotides10010 and 10011 are separated by 484 nucleotides10011 and 10012 are separated by 172 nucleotides mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783,774 to 785,106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785,580 to 788,144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788,752 to 789,941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790,426 to 792,624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792,797 to 794,915 10012
Group Condition mRNA_1640 mRNA_1641 mRNA_1642 mRNA_1643 mRNA_1644
10008 10009 10010 10011 10012
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.7 -1.1 -0.3 -0.0
growth on ypd YPD +0.0 -0.3 -0.2 -0.4 -0.6
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.2 -1.3 +0.4 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.2 -0.2 -0.2 -0.3
auxotrophy Dropout Complete +0.0 -0.8 -0.0 +0.4 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.2 -0.3 -0.1 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.6 -0.3 -0.1 -0.0
growth on oleic acid YNB Oleic Acid +0.2 -0.3 -0.5 +0.4 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.6 +0.2 +0.2 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -0.3 -0.9 +0.7 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.0 +0.2 -0.0 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.3 +0.0 +0.0 -0.1 +0.3
growth on oleic acid YNB Glucose +0.2 -0.2 -0.2 +0.2 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.4 +0.3 +0.3 -0.3 +0.1
auxotrophy YNB Glucose +0.2 -0.1 -0.3 +0.7 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 -0.5 +1.1 -0.7 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.1 +0.1 +0.4 -0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 -0.4 +0.1 +0.1 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.1 +0.2 +0.1 -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.1 +0.3 +0.1 -0.0
growth on ricinoleic acid YNB Glucose +0.2 -0.2 -0.2 +0.5 +0.4
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