Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10009 and 10010 are separated by 607 nucleotides10010 and 10011 are separated by 484 nucleotides10011 and 10012 are separated by 172 nucleotides10012 and 10013 are separated by 176 nucleotides mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785,580 to 788,144 10009 mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788,752 to 789,941 10010 mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790,426 to 792,624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792,797 to 794,915 10012 mRNA_1645: 10013 - Hypothetical Protein, at 795,092 to 795,670 10013
Group Condition mRNA_1641 mRNA_1642 mRNA_1643 mRNA_1644 mRNA_1645
10009 10010 10011 10012 10013
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 -1.1 -0.3 -0.0 N.D.
growth on ypd YPD -0.3 -0.2 -0.4 -0.6 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -1.3 +0.4 +0.1 N.D.
auxotrophy Dropout Complete -0.8 -0.0 +0.4 -0.6 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.2 -0.2 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 -0.3 -0.1 -0.0 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.6 +0.2 +0.2 -0.6 N.D.
growth on oleic acid YNB Oleic Acid -0.3 -0.5 +0.4 -0.2 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.3 -0.1 -0.0 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 -0.9 +0.7 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 +0.1 +0.1 -0.1 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 +1.1 -0.7 -0.2 N.D.
growth on oleic acid YNB Glucose -0.2 -0.2 +0.2 -0.0 N.D.
auxotrophy YNB Glucose -0.1 -0.3 +0.7 -0.4 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.1 +0.4 -0.5 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 +0.2 -0.0 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.2 +0.1 -0.3 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.0 -0.1 +0.3 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.3 +0.1 -0.0 N.D.
growth on ricinoleic acid YNB Glucose -0.2 -0.2 +0.5 +0.4 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.3 +0.3 -0.3 +0.1 N.D.
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