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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10010 and 10011 are separated by 484 nucleotides
10011 and 10012 are separated by 172 nucleotides
10012 and 10013 are separated by 176 nucleotides
10013 and 10014 are separated by 334 nucleotides
mRNA_1642: 10010 - K03937 NDUFS4 NADH dehydrogenase (ubiquinone) Fe-S protein 4, at 788,752 to 789,941
10010
mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790,426 to 792,624
10011
mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792,797 to 794,915
10012
mRNA_1645: 10013 - Hypothetical Protein, at 795,092 to 795,670
10013
mRNA_1646: 10014 - KOG2182 Hydrolytic enzymes of the alpha/beta hydrolase fold, at 796,005 to 798,167
10014
Group
Condition
mRNA
_1642
mRNA
_1643
mRNA
_1644
mRNA
_1645
mRNA
_1646
10010
10011
10012
10013
10014
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
-0.3
-0.0
N.D.
+0.2
growth on ypd
YPD
-0.2
-0.4
-0.6
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
+0.4
+0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.5
+0.4
-0.2
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.6
N.D.
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.0
N.D.
-0.2
auxotrophy
Dropout Complete
-0.0
+0.4
-0.6
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.4
-0.5
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
+0.1
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.0
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.3
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.0
N.D.
-0.2
auxotrophy
YNB Glucose
-0.3
+0.7
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.0
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
+0.7
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
-0.7
-0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.5
+0.4
N.D.
+0.1
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