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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10015 and 10016 are separated by 461 nucleotides
10016 and 10017 are separated by 131 nucleotides
10017 and 10018 are separated by 886 nucleotides
10018 and 10019 are separated by 193 nucleotides
mRNA_1647: 10015 - K02930 RP-L4e, RPL4 large subunit ribosomal protein L4e, at 800,171 to 801,820
10015
mRNA_1648: 10016 - K11436 PRMT3 type I protein arginine methyltransferase, at 802,282 to 804,374
10016
mRNA_1649: 10017 - KOG2495 NADH-dehydrogenase (ubiquinone), at 804,506 to 806,689
10017
mRNA_1650: 10018 - KOG0254 Predicted transporter (major facilitator superfamily), at 807,576 to 811,155
10018
mRNA_1651: 10019 - SUPERFAMILY--SSF69047, at 811,349 to 811,874
10019
Group
Condition
mRNA
_1647
mRNA
_1648
mRNA
_1649
mRNA
_1650
mRNA
_1651
10015
10016
10017
10018
10019
growth on ypd
YPD
N.D.
N.D.
-0.3
-0.4
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
-0.8
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
-0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
-0.7
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
+0.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.6
-0.7
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.7
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.5
-1.0
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
-0.4
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
-0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.3
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.5
-0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.4
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.7
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.5
+0.4
+0.1
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