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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10017 and 10018 are separated by 886 nucleotides
10018 and 10019 are separated by 193 nucleotides
10019 and 10020 are separated by 567 nucleotides
10020 and 10021 are separated by 915 nucleotides
mRNA_1649: 10017 - KOG2495 NADH-dehydrogenase (ubiquinone), at 804,506 to 806,689
10017
mRNA_1650: 10018 - KOG0254 Predicted transporter (major facilitator superfamily), at 807,576 to 811,155
10018
mRNA_1651: 10019 - SUPERFAMILY--SSF69047, at 811,349 to 811,874
10019
mRNA_1652: 10020 - Hypothetical Protein, at 812,442 to 813,114
10020
mRNA_1653: 10021 - Hypothetical Protein, at 814,030 to 815,626
10021
Group
Condition
mRNA
_1649
mRNA
_1650
mRNA
_1651
mRNA
_1652
mRNA
_1653
10017
10018
10019
10020
10021
growth on ypd
YPD
-0.3
-0.4
-0.0
-0.6
+0.1
auxotrophy
Dropout Complete
+0.1
-0.8
+0.0
-0.2
-0.2
auxotrophy
YNB Glucose
+0.1
-0.6
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.0
+0.4
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.7
+0.1
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.4
-0.5
+0.2
-0.6
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
-0.7
+0.3
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.7
+0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-1.0
+0.4
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.3
+0.1
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
+0.0
-0.8
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.4
+0.0
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
+0.3
-0.4
+0.0
growth on oleic acid
YNB Glucose
+0.4
-0.2
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.2
-0.1
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.1
+0.2
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.1
-0.0
-0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.4
+0.1
-0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.0
+0.5
+0.5
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