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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10020 and 10021 are separated by 915 nucleotides
10021 and 10022 are separated by 636 nucleotides
10022 and 10023 are separated by 1820 nucleotides
10023 and 10024 are separated by 121 nucleotides
mRNA_1652: 10020 - Hypothetical Protein, at 812,442 to 813,114
10020
mRNA_1653: 10021 - Hypothetical Protein, at 814,030 to 815,626
10021
mRNA_1654: 10022 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 816,263 to 817,600
10022
mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819,421 to 820,962
10023
mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700
10024
Group
Condition
mRNA
_1652
mRNA
_1653
mRNA
_1654
mRNA
_1655
mRNA
_1656
10020
10021
10022
10023
10024
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.2
-1.9
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
-1.3
+0.0
N.D.
auxotrophy
Dropout Complete
-0.2
-0.2
-1.0
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.6
-0.0
-0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
-0.6
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
-0.7
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.3
-0.6
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.2
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.0
-0.0
N.D.
auxotrophy
YNB Glucose
-0.1
-0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.3
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
+0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
+0.4
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.3
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.0
+1.2
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
+1.3
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.5
+0.2
-0.0
N.D.
growth on ypd
YPD
-0.6
+0.1
+1.3
+0.5
N.D.
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