Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10021 and 10022 are separated by 636 nucleotides10022 and 10023 are separated by 1820 nucleotides10023 and 10024 are separated by 121 nucleotides10024 and 10025 are separated by 489 nucleotides mRNA_1653: 10021 - Hypothetical Protein, at 814,030 to 815,626 10021 mRNA_1654: 10022 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 816,263 to 817,600 10022 mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819,421 to 820,962 10023 mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700 10024 mRNA_1657: 10025 - K08286 E2.7.11.- protein-serine/threonine kinase, at 823,190 to 825,684 10025
Group Condition mRNA_1653 mRNA_1654 mRNA_1655 mRNA_1656 mRNA_1657
10021 10022 10023 10024 10025
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.2 -0.4 N.D. -4.8
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 +0.4 +0.1 N.D. -4.3
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.0 -0.0 N.D. -3.5
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -1.3 +0.0 N.D. -1.3
growth on oleic acid YNB Oleic Acid -0.0 -0.3 +0.1 N.D. -1.9
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 -0.6 +0.2 N.D. -1.1
auxotrophy Dropout Complete -0.2 -1.0 +0.2 N.D. -0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.6 +0.3 N.D. -0.7
auxotrophy YNB Glucose -0.1 +0.1 +0.1 N.D. -1.0
auxotrophy YNB Glucose 75mM Methionine -0.3 +0.3 -0.2 N.D. -0.7
growth on ricinoleic acid YNB Glucose -0.1 +1.3 +0.2 N.D. -1.7
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.2 -0.0 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -0.1 +0.1 N.D. -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 -0.7 +0.2 N.D. +0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +1.2 +0.3 N.D. -1.0
growth on oleic acid YNB Glucose +0.1 +0.3 +0.5 N.D. -0.3
ypd buoyancy 40 hrs High Buoyancy +0.5 +0.2 -0.0 N.D. +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 +0.0 +0.0 N.D. +0.5
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -1.9 +0.3 N.D. +2.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.2 -0.0 N.D. +1.0
growth on ypd YPD +0.1 +1.3 +0.5 N.D. +0.2
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