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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10021 and 10022 are separated by 636 nucleotides
10022 and 10023 are separated by 1820 nucleotides
10023 and 10024 are separated by 121 nucleotides
10024 and 10025 are separated by 489 nucleotides
mRNA_1653: 10021 - Hypothetical Protein, at 814,030 to 815,626
10021
mRNA_1654: 10022 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 816,263 to 817,600
10022
mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819,421 to 820,962
10023
mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700
10024
mRNA_1657: 10025 - K08286 E2.7.11.- protein-serine/threonine kinase, at 823,190 to 825,684
10025
Group
Condition
mRNA
_1653
mRNA
_1654
mRNA
_1655
mRNA
_1656
mRNA
_1657
10021
10022
10023
10024
10025
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
-0.4
N.D.
-4.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
+0.1
N.D.
-4.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
-0.0
N.D.
-3.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.3
+0.0
N.D.
-1.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
+0.1
N.D.
-1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.6
+0.2
N.D.
-1.1
auxotrophy
Dropout Complete
-0.2
-1.0
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.6
+0.3
N.D.
-0.7
auxotrophy
YNB Glucose
-0.1
+0.1
+0.1
N.D.
-1.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
-0.2
N.D.
-0.7
growth on ricinoleic acid
YNB Glucose
-0.1
+1.3
+0.2
N.D.
-1.7
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.2
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+1.2
+0.3
N.D.
-1.0
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.5
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.2
-0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
+0.0
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-1.9
+0.3
N.D.
+2.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
-0.0
N.D.
+1.0
growth on ypd
YPD
+0.1
+1.3
+0.5
N.D.
+0.2
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