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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10024 and 10025 are separated by 489 nucleotides
10025 and 10026 are separated by 1146 nucleotides
10026 and 10027 are separated by 810 nucleotides
10027 and 10028 are separated by 167 nucleotides
mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700
10024
mRNA_1657: 10025 - K08286 E2.7.11.- protein-serine/threonine kinase, at 823,190 to 825,684
10025
mRNA_1658: 10026 - K02893 RP-L23Ae, RPL23A large subunit ribosomal protein L23Ae, at 826,831 to 828,048
10026
mRNA_1659: 10027 - K08741 MSH5 DNA mismatch repair protein MSH5, at 828,859 to 833,266
10027
mRNA_1660: 10028 - Hypothetical Protein, at 833,434 to 834,294
10028
Group
Condition
mRNA
_1656
mRNA
_1657
mRNA
_1658
mRNA
_1659
mRNA
_1660
10024
10025
10026
10027
10028
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-3.5
N.D.
+0.1
-1.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-4.8
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-4.3
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.3
N.D.
-0.1
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.0
N.D.
+0.1
-1.6
growth on oleic acid
YNB Oleic Acid
N.D.
-1.9
N.D.
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-1.7
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
N.D.
-0.1
-1.3
auxotrophy
YNB Glucose
N.D.
-1.0
N.D.
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.7
N.D.
-0.2
-0.4
auxotrophy
Dropout Complete
N.D.
-0.1
N.D.
+0.1
-0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.7
N.D.
+0.0
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.3
N.D.
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.1
N.D.
-0.0
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
N.D.
-0.1
-0.6
growth on ypd
YPD
N.D.
+0.2
N.D.
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
N.D.
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+1.0
N.D.
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+2.7
N.D.
-0.2
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
N.D.
+0.0
+1.3
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