Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10027 and 10028 are separated by 167 nucleotides10028 and 10029 are separated by 90 nucleotides10029 and 10030 are separated by 640 nucleotides10030 and 10031 are separated by 790 nucleotides mRNA_1659: 10027 - K08741 MSH5 DNA mismatch repair protein MSH5, at 828,859 to 833,266 10027 mRNA_1660: 10028 - Hypothetical Protein, at 833,434 to 834,294 10028 mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834,385 to 835,559 10029 mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836,200 to 837,347 10030 mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838,138 to 838,939 10031
Group Condition mRNA_1659 mRNA_1660 mRNA_1661 mRNA_1662 mRNA_1663
10027 10028 10029 10030 10031
ypd buoyancy 40 hrs Low Buoyancy +0.1 -1.9 -0.0 -0.3 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -1.0 -0.8 -0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.1 -1.3 -0.4 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.6 -0.2 -0.4 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -1.6 -0.4 +0.7 N.D.
auxotrophy Dropout Complete +0.1 -0.9 -0.0 -0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -1.3 +0.5 -0.2 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.4 -0.0 -0.0 N.D.
growth on oleic acid YNB Glucose +0.1 -0.5 -0.1 -0.0 N.D.
growth on oleic acid YNB Oleic Acid -0.0 -0.2 -0.2 +0.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.4 +0.2 -0.1 N.D.
growth on ypd YPD +0.0 +0.2 -0.6 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.4 -0.2 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 +0.6 -0.5 +0.0 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.4 +0.1 +0.3 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.8 -0.4 -0.3 N.D.
auxotrophy YNB Glucose -0.0 -0.3 +0.2 +0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.3 -0.2 +0.3 N.D.
growth on ricinoleic acid YNB Glucose +0.1 +0.2 +0.0 -0.0 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.0 -0.1 +0.2 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 +1.3 +0.2 -0.2 N.D.
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