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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10028 and 10029 are separated by 90 nucleotides
10029 and 10030 are separated by 640 nucleotides
10030 and 10031 are separated by 790 nucleotides
10031 and 10032 are separated by 427 nucleotides
mRNA_1660: 10028 - Hypothetical Protein, at 833,434 to 834,294
10028
mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834,385 to 835,559
10029
mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836,200 to 837,347
10030
mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838,138 to 838,939
10031
mRNA_1664: 10032 - Hypothetical Protein, at 839,367 to 840,051
10032
Group
Condition
mRNA
_1660
mRNA
_1661
mRNA
_1662
mRNA
_1663
mRNA
_1664
10028
10029
10030
10031
10032
ypd buoyancy
40 hrs Low Buoyancy
-1.9
-0.0
-0.3
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.8
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.6
-0.4
+0.7
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
-0.4
+0.4
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.5
-0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.2
-0.4
N.D.
-0.1
auxotrophy
Dropout Complete
-0.9
-0.0
-0.3
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.5
-0.1
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.2
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.4
-0.3
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
+0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
+0.3
N.D.
-0.1
growth on ypd
YPD
+0.2
-0.6
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.5
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
-0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
+0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose
-0.3
+0.2
+0.2
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.3
+0.2
-0.2
N.D.
-0.3
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