Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10029 and 10030 are separated by 640 nucleotides10030 and 10031 are separated by 790 nucleotides10031 and 10032 are separated by 427 nucleotides10032 and 10033 are separated by 21 nucleotides mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834,385 to 835,559 10029 mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836,200 to 837,347 10030 mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838,138 to 838,939 10031 mRNA_1664: 10032 - Hypothetical Protein, at 839,367 to 840,051 10032 mRNA_1665: 10033 - K03358 APC11 anaphase-promoting complex subunit 11, at 840,073 to 840,626 10033
Group Condition mRNA_1661 mRNA_1662 mRNA_1663 mRNA_1664 mRNA_1665
10029 10030 10031 10032 10033
facs on lipid accumulation Sorted Low BODIPY Gate -0.8 -0.1 N.D. -0.3 -0.8
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.3 N.D. -0.4 -0.6
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 +0.3 N.D. -0.3 -0.6
ypd buoyancy 40 hrs High Buoyancy -0.4 -0.3 N.D. -0.5 +0.5
auxotrophy Dropout Complete -0.0 -0.3 N.D. -0.0 -0.1
growth on ricinoleic acid YNB Glucose +0.0 -0.0 N.D. -0.1 -0.3
growth on oleic acid YNB Glucose -0.1 -0.0 N.D. -0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.4 N.D. -0.1 +0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.4 +0.4 N.D. -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 -0.3 N.D. +0.0 +0.4
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +0.7 N.D. -0.3 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 +0.0 N.D. -0.2 +0.7
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.1 N.D. -0.3 +0.2
auxotrophy YNB Glucose 75mM Methionine -0.0 -0.0 N.D. -0.2 +0.3
growth on oleic acid YNB Oleic Acid -0.2 +0.0 N.D. +0.0 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 -0.2 N.D. -0.3 +0.6
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.3 N.D. -0.1 +0.1
growth on ypd YPD -0.6 +0.1 N.D. +0.1 +0.8
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.3 N.D. +0.1 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 -0.2 N.D. -0.4 +0.7
auxotrophy YNB Glucose +0.2 +0.2 N.D. -0.0 +0.3
remove
mRNA_1661
plot
remove
mRNA_1662
plot
remove
mRNA_1663
remove
mRNA_1664
plot
remove
mRNA_1665
plot