Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10030 and 10031 are separated by 790 nucleotides10031 and 10032 are separated by 427 nucleotides10032 and 10033 are separated by 21 nucleotides10033 and 10034 are separated by 293 nucleotides mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836,200 to 837,347 10030 mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838,138 to 838,939 10031 mRNA_1664: 10032 - Hypothetical Protein, at 839,367 to 840,051 10032 mRNA_1665: 10033 - K03358 APC11 anaphase-promoting complex subunit 11, at 840,073 to 840,626 10033 mRNA_1666: 10034 - HMMPfam-Nucleolar protein 12 (25kDa)-PF09805, at 840,920 to 841,915 10034
Group Condition mRNA_1662 mRNA_1663 mRNA_1664 mRNA_1665 mRNA_1666
10030 10031 10032 10033 10034
ypd buoyancy 40 hrs Low Buoyancy -0.3 N.D. -0.4 -0.6 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 N.D. -0.3 -0.8 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 N.D. -0.3 -0.6 N.D.
auxotrophy Dropout Complete -0.3 N.D. -0.0 -0.1 N.D.
growth on ricinoleic acid YNB Glucose -0.0 N.D. -0.1 -0.3 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. -0.5 +0.5 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. -0.3 +0.2 N.D.
growth on oleic acid YNB Glucose -0.0 N.D. -0.1 -0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 N.D. -0.1 +0.5 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.0 N.D. -0.2 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 N.D. +0.0 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 N.D. -0.3 +0.6 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 N.D. -0.4 +0.7 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 N.D. -0.1 +0.1 N.D.
growth on oleic acid YNB Oleic Acid +0.0 N.D. +0.0 +0.2 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.3 N.D. +0.1 -0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.4 N.D. -0.1 +0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.7 N.D. -0.3 -0.0 N.D.
auxotrophy YNB Glucose +0.2 N.D. -0.0 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 N.D. -0.2 +0.7 N.D.
growth on ypd YPD +0.1 N.D. +0.1 +0.8 N.D.
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