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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10035 and 10036 are separated by 957 nucleotides
10036 and 10037 are separated by 297 nucleotides
10037 and 10038 are separated by 376 nucleotides
10038 and 10039 are separated by 708 nucleotides
mRNA_1667: 10035 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 842,295 to 847,609
10035
mRNA_1668: 10036 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848,567 to 849,208
10036
mRNA_1669: 10037 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849,506 to 850,957
10037
mRNA_1670: 10038 - K15918 GLYK D-glycerate 3-kinase, at 851,334 to 852,644
10038
mRNA_1671: 10039 - K13344 PEX13 peroxin-13, at 853,353 to 854,767
10039
Group
Condition
mRNA
_1667
mRNA
_1668
mRNA
_1669
mRNA
_1670
mRNA
_1671
10035
10036
10037
10038
10039
auxotrophy
Dropout Complete
-0.2
-0.6
+0.2
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-1.2
-0.1
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
+0.0
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.0
-0.2
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.8
+0.2
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
+0.5
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.4
+0.0
N.D.
auxotrophy
YNB Glucose
-0.1
+0.3
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.4
+0.1
+0.1
N.D.
growth on ypd
YPD
-0.1
+0.9
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.3
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.3
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.6
+0.7
-0.1
N.D.
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