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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10037 and 10038 are separated by 376 nucleotides
10038 and 10039 are separated by 708 nucleotides
10039 and 10040 are separated by 620 nucleotides
10040 and 10041 are separated by 235 nucleotides
mRNA_1669: 10037 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849,506 to 850,957
10037
mRNA_1670: 10038 - K15918 GLYK D-glycerate 3-kinase, at 851,334 to 852,644
10038
mRNA_1671: 10039 - K13344 PEX13 peroxin-13, at 853,353 to 854,767
10039
mRNA_1672: 10040 - K00382 DLD, lpd, pdhD dihydrolipoamide dehydrogenase, at 855,388 to 857,888
10040
mRNA_1673: 10041 - Hypothetical Protein, at 858,124 to 858,750
10041
Group
Condition
mRNA
_1669
mRNA
_1670
mRNA
_1671
mRNA
_1672
mRNA
_1673
10037
10038
10039
10040
10041
growth on oleic acid
YNB Glucose
-0.2
-0.5
N.D.
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.3
N.D.
N.D.
-0.4
growth on ypd
YPD
-0.1
-0.0
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
N.D.
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.4
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
N.D.
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.6
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.4
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.4
N.D.
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.4
+0.0
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.4
N.D.
N.D.
+0.2
auxotrophy
Dropout Complete
+0.2
-0.1
N.D.
N.D.
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.1
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose
+0.1
-0.0
N.D.
N.D.
+0.8
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