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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10039 and 10040 are separated by 620 nucleotides
10040 and 10041 are separated by 235 nucleotides
10041 and 10042 are separated by 1450 nucleotides
10042 and 10043 are separated by 549 nucleotides
mRNA_1671: 10039 - K13344 PEX13 peroxin-13, at 853,353 to 854,767
10039
mRNA_1672: 10040 - K00382 DLD, lpd, pdhD dihydrolipoamide dehydrogenase, at 855,388 to 857,888
10040
mRNA_1673: 10041 - Hypothetical Protein, at 858,124 to 858,750
10041
mRNA_1674: 10042 - K07297 ADIPOR adiponectin receptor, at 860,201 to 862,501
10042
mRNA_1675: 10043 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 863,051 to 864,755
10043
Group
Condition
mRNA
_1671
mRNA
_1672
mRNA
_1673
mRNA
_1674
mRNA
_1675
10039
10040
10041
10042
10043
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
+0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
+0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.4
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
+0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.0
+0.1
growth on ypd
YPD
N.D.
N.D.
-0.1
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.3
+0.6
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.8
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.5
+0.7
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.8
+0.5
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.8
+0.8
+0.2
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