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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10040 and 10041 are separated by 235 nucleotides
10041 and 10042 are separated by 1450 nucleotides
10042 and 10043 are separated by 549 nucleotides
10043 and 10044 are separated by 857 nucleotides
mRNA_1672: 10040 - K00382 DLD, lpd, pdhD dihydrolipoamide dehydrogenase, at 855,388 to 857,888
10040
mRNA_1673: 10041 - Hypothetical Protein, at 858,124 to 858,750
10041
mRNA_1674: 10042 - K07297 ADIPOR adiponectin receptor, at 860,201 to 862,501
10042
mRNA_1675: 10043 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 863,051 to 864,755
10043
mRNA_1676: 10044 - SUPERFAMILY--SSF81383, at 865,613 to 866,688
10044
Group
Condition
mRNA
_1672
mRNA
_1673
mRNA
_1674
mRNA
_1675
mRNA
_1676
10040
10041
10042
10043
10044
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-0.3
+0.1
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.6
-0.4
-1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.3
-0.5
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.1
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.5
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+0.3
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.5
-0.3
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
-0.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.0
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.0
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.0
+0.1
-0.4
growth on ypd
YPD
N.D.
-0.1
+0.5
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.5
+0.2
-0.4
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.5
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
+0.4
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.8
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.4
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
+0.7
+0.0
-0.2
auxotrophy
YNB Glucose
N.D.
+0.8
+0.5
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.8
+0.8
+0.2
+0.1
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