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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10044 and 10045 are separated by 2080 nucleotides
10045 and 10046 are separated by 133 nucleotides
10046 and 10047 are separated by 89 nucleotides
10047 and 10048 are separated by 676 nucleotides
mRNA_1676: 10044 - SUPERFAMILY--SSF81383, at 865,613 to 866,688
10044
mRNA_1677: 10045 - K15620 GOLPH3, GPP34 golgi phosphoprotein 3, at 868,769 to 870,335
10045
mRNA_1678: 10046 - K09498 CCT6 T-complex protein 1 subunit zeta, at 870,469 to 873,019
10046
mRNA_1679: 10047 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 873,109 to 875,707
10047
mRNA_1680: 10048 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 876,384 to 878,826
10048
Group
Condition
mRNA
_1676
mRNA
_1677
mRNA
_1678
mRNA
_1679
mRNA
_1680
10044
10045
10046
10047
10048
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-2.6
N.D.
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-1.2
N.D.
-0.7
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.4
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.4
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
N.D.
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.5
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.6
N.D.
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
-0.9
+1.0
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.7
N.D.
-0.3
+0.0
growth on ypd
YPD
-0.3
+0.0
N.D.
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.8
N.D.
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.7
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+1.0
N.D.
+0.3
-0.1
growth on oleic acid
YNB Glucose
-0.1
+1.2
N.D.
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
+3.0
N.D.
+0.5
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
+2.6
N.D.
+0.4
-0.6
auxotrophy
YNB Glucose
+0.1
+1.2
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+1.9
N.D.
+0.5
-0.6
auxotrophy
Dropout Complete
+0.1
+1.1
N.D.
+0.5
+0.2
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