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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10050 and 10051 are separated by 588 nucleotides
10051 and 10052 are separated by 227 nucleotides
10052 and 10053 are separated by 525 nucleotides
10053 and 10054 are separated by 810 nucleotides
mRNA_1682: 10050 - Hypothetical Protein, at 881,676 to 882,111
10050
mRNA_1683: 10051 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 882,700 to 883,622
10051
mRNA_1684: 10052 - Hypothetical Protein, at 883,850 to 884,776
10052
mRNA_1685: 10053 - Hypothetical Protein, at 885,302 to 886,420
10053
mRNA_1686: 10054 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 887,231 to 890,283
10054
Group
Condition
mRNA
_1682
mRNA
_1683
mRNA
_1684
mRNA
_1685
mRNA
_1686
10050
10051
10052
10053
10054
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-1.9
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+1.3
N.D.
-2.5
growth on ypd
YPD
-0.1
N.D.
-0.8
N.D.
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.3
N.D.
-2.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.2
N.D.
-1.7
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
N.D.
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-1.1
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.6
N.D.
-1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.4
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.0
N.D.
+0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.4
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.5
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.0
N.D.
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.9
N.D.
+0.0
auxotrophy
YNB Glucose
+0.0
N.D.
+0.3
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
N.D.
+1.8
N.D.
+0.4
auxotrophy
Dropout Complete
+0.1
N.D.
+1.0
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
+2.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+1.9
N.D.
+1.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
+1.9
N.D.
+2.0
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