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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10058 and 10059 are separated by 2074 nucleotides
10059 and 10060 are separated by 1052 nucleotides
10060 and 10061 are separated by 259 nucleotides
10061 and 10062 are separated by 393 nucleotides
mRNA_1690: 10058 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 900,281 to 902,715
10058
mRNA_1691: 10059 - K16261 YAT yeast amino acid transporter, at 904,790 to 907,091
10059
mRNA_1692: 10060 - K20292 COG5 conserved oligomeric Golgi complex subunit 5, at 908,144 to 911,524
10060
mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911,784 to 914,454
10061
mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914,848 to 915,614
10062
Group
Condition
mRNA
_1690
mRNA
_1691
mRNA
_1692
mRNA
_1693
mRNA
_1694
10058
10059
10060
10061
10062
facs on lipid accumulation
Sorted No BODIPY Gate
-2.2
-0.2
-0.3
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.2
+0.1
-0.4
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.7
-0.2
-0.3
-0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.3
-0.7
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
-0.2
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.2
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
-0.2
+0.1
+0.1
growth on ypd
YPD
+0.2
+0.0
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
+0.2
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
+0.2
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.0
-0.2
+0.6
-0.2
+0.0
auxotrophy
YNB Glucose
-0.2
-0.1
+0.3
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.5
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.4
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
+0.7
-0.1
-0.0
auxotrophy
Dropout Complete
-0.2
-0.1
+0.8
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.4
+0.7
+0.1
+0.6
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
+0.4
+0.2
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.2
+1.1
+0.2
+0.4
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