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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10059 and 10060 are separated by 1052 nucleotides
10060 and 10061 are separated by 259 nucleotides
10061 and 10062 are separated by 393 nucleotides
10062 and 10063 are separated by 632 nucleotides
mRNA_1691: 10059 - K16261 YAT yeast amino acid transporter, at 904,790 to 907,091
10059
mRNA_1692: 10060 - K20292 COG5 conserved oligomeric Golgi complex subunit 5, at 908,144 to 911,524
10060
mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911,784 to 914,454
10061
mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914,848 to 915,614
10062
mRNA_1695: 10063 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 916,247 to 917,394
10063
Group
Condition
mRNA
_1691
mRNA
_1692
mRNA
_1693
mRNA
_1694
mRNA
_1695
10059
10060
10061
10062
10063
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.7
+0.2
-0.5
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.2
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
-0.0
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
-0.0
-0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
-0.1
+0.2
+0.2
growth on ypd
YPD
+0.0
-0.1
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.2
+0.2
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.6
-0.2
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.1
+0.1
+0.0
auxotrophy
YNB Glucose
-0.1
+0.3
+0.1
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
+0.1
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.7
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.5
+0.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
+0.2
+0.2
+0.1
auxotrophy
Dropout Complete
-0.1
+0.8
+0.2
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.7
+0.1
+0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+1.1
+0.2
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
+0.2
+0.7
-0.0
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