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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10063 and 10064 are separated by 273 nucleotides
10064 and 10065 are separated by 402 nucleotides
10065 and 10066 are separated by 345 nucleotides
10066 and 10067 are separated by 252 nucleotides
mRNA_1695: 10063 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 916,247 to 917,394
10063
mRNA_1696: 10064 - BLAST membrane-associating domain protein [Rhizoctonia sola..., at 917,668 to 919,209
10064
mRNA_1697: 10065 - BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP], at 919,612 to 920,343
10065
mRNA_1698: 10066 - K11493 RCC1 regulator of chromosome condensation, at 920,689 to 923,433
10066
mRNA_1699: 10067 - K10751 CHAF1B chromatin assembly factor 1 subunit B, at 923,686 to 926,901
10067
Group
Condition
mRNA
_1695
mRNA
_1696
mRNA
_1697
mRNA
_1698
mRNA
_1699
10063
10064
10065
10066
10067
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.4
-0.4
N.D.
-1.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.2
N.D.
-1.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
+0.6
N.D.
-2.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.6
-0.3
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
+0.1
N.D.
-1.7
auxotrophy
YNB Glucose
-0.2
-0.5
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.3
N.D.
-0.6
growth on ypd
YPD
+0.0
-0.6
-0.3
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.2
N.D.
-0.3
auxotrophy
Dropout Complete
-0.1
-0.3
+0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
+0.1
N.D.
+0.5
growth on oleic acid
YNB Glucose
-0.0
-0.3
+0.2
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.0
N.D.
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
+0.2
N.D.
+0.9
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
+0.1
N.D.
+1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.9
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
+1.2
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+1.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
+1.1
N.D.
+0.9
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