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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10064 and 10065 are separated by 402 nucleotides
10065 and 10066 are separated by 345 nucleotides
10066 and 10067 are separated by 252 nucleotides
10067 and 10068 are separated by 258 nucleotides
mRNA_1696: 10064 - BLAST membrane-associating domain protein [Rhizoctonia sola..., at 917,668 to 919,209
10064
mRNA_1697: 10065 - BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP], at 919,612 to 920,343
10065
mRNA_1698: 10066 - K11493 RCC1 regulator of chromosome condensation, at 920,689 to 923,433
10066
mRNA_1699: 10067 - K10751 CHAF1B chromatin assembly factor 1 subunit B, at 923,686 to 926,901
10067
mRNA_1700: 10068 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 927,160 to 928,283
10068
Group
Condition
mRNA
_1696
mRNA
_1697
mRNA
_1698
mRNA
_1699
mRNA
_1700
10064
10065
10066
10067
10068
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.4
N.D.
-1.5
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
-1.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.6
N.D.
-2.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.3
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.2
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose
-0.5
+0.0
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
N.D.
-1.7
+0.6
growth on ypd
YPD
-0.6
-0.3
N.D.
+0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
N.D.
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
-0.3
-0.1
auxotrophy
Dropout Complete
-0.3
+0.3
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
N.D.
+0.5
+0.0
growth on oleic acid
YNB Glucose
-0.3
+0.2
N.D.
+0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
N.D.
+1.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.9
N.D.
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
+1.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.2
N.D.
+0.9
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+1.3
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+1.1
N.D.
+0.9
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+1.2
N.D.
+0.7
-0.0
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