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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10065 and 10066 are separated by 345 nucleotides
10066 and 10067 are separated by 252 nucleotides
10067 and 10068 are separated by 258 nucleotides
10068 and 10069 are separated by 293 nucleotides
mRNA_1697: 10065 - BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP], at 919,612 to 920,343
10065
mRNA_1698: 10066 - K11493 RCC1 regulator of chromosome condensation, at 920,689 to 923,433
10066
mRNA_1699: 10067 - K10751 CHAF1B chromatin assembly factor 1 subunit B, at 923,686 to 926,901
10067
mRNA_1700: 10068 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 927,160 to 928,283
10068
mRNA_1701: 10069 - K03522 fixB, etfA electron transfer flavoprotein alpha subunit, at 928,577 to 930,398
10069
Group
Condition
mRNA
_1697
mRNA
_1698
mRNA
_1699
mRNA
_1700
mRNA
_1701
10065
10066
10067
10068
10069
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-1.5
+0.0
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
-1.5
+0.2
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-1.7
+0.6
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
-2.0
+0.2
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+1.0
+0.2
-2.8
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.5
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.1
-0.4
-0.7
auxotrophy
YNB Glucose
+0.0
N.D.
-0.2
-0.2
-0.9
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.3
-0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.6
+0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.9
+0.2
-1.9
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.5
+0.0
-1.0
growth on ypd
YPD
-0.3
N.D.
+0.5
-0.1
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.1
+0.2
-0.5
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+1.4
+0.3
-1.9
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.5
-0.0
-0.6
auxotrophy
Dropout Complete
+0.3
N.D.
+0.1
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
N.D.
+0.9
+0.2
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
N.D.
+0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.3
N.D.
+0.3
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
N.D.
+0.7
-0.0
+0.1
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