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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10069 and 10070 are separated by 428 nucleotides
10070 and 10071 are separated by 1993 nucleotides
10071 and 10072 are separated by 750 nucleotides
10072 and 10073 are separated by 416 nucleotides
mRNA_1701: 10069 - K03522 fixB, etfA electron transfer flavoprotein alpha subunit, at 928,577 to 930,398
10069
mRNA_1702: 10070 - Hypothetical Protein, at 930,827 to 931,156
10070
mRNA_1703: 10071 - SUPERFAMILY--SSF49764, at 933,150 to 935,625
10071
mRNA_1704: 10072 - K17777 TIM9 mitochondrial import inner membrane translocase subunit TIM9, at 936,376 to 936,792
10072
mRNA_1705: 10073 - K03264 EIF6 translation initiation factor 6, at 937,209 to 938,526
10073
Group
Condition
mRNA
_1701
mRNA
_1702
mRNA
_1703
mRNA
_1704
mRNA
_1705
10069
10070
10071
10072
10073
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.8
-0.0
-0.1
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-1.9
-0.2
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.7
-0.2
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
-0.0
-0.1
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
-0.0
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.0
-0.1
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.5
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose
-0.9
-0.4
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
-0.2
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
+0.9
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.2
+0.2
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.6
+0.4
-0.2
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.1
+0.2
N.D.
+0.3
auxotrophy
Dropout Complete
+0.6
-0.9
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.4
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.8
-0.0
N.D.
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.7
+0.2
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.1
+0.2
N.D.
+0.8
growth on ypd
YPD
-0.4
+0.7
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.2
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.1
N.D.
+0.9
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