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Fitness for 4 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10074 and 10075 overlap by 4 nucleotides
10075 and 10076 are separated by 1019 nucleotides
10076 and 10077 are separated by 551 nucleotides
mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191
10074
mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835
10075
mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3,855 to 4,476
10076
mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5,028 to 7,438
10077
Group
Condition
mRNA
_1706
mRNA
_1707
mRNA
_1708
mRNA
_1709
10074
10075
10076
10077
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.5
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.5
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+0.2
+0.3
auxotrophy
Dropout Complete
-0.3
+0.0
+0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
+0.3
+0.3
growth on ypd
YPD
-0.1
+0.1
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.6
-0.1
auxotrophy
YNB Glucose
+0.1
+0.3
+0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.5
+0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.5
+0.8
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.7
+0.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.9
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+1.0
+0.1
+0.3
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