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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10075 and 10076 are separated by 1019 nucleotides
10076 and 10077 are separated by 551 nucleotides
10077 and 10078 are separated by 560 nucleotides
10078 and 10079 are separated by 319 nucleotides
mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835
10075
mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3,855 to 4,476
10076
mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5,028 to 7,438
10077
mRNA_1710: 10078 - Hypothetical Protein, at 7,999 to 8,750
10078
mRNA_1711: 10079 - K01887 RARS, argS arginyl-tRNA synthetase, at 9,070 to 11,520
10079
Group
Condition
mRNA
_1707
mRNA
_1708
mRNA
_1709
mRNA
_1710
mRNA
_1711
10075
10076
10077
10078
10079
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.3
-0.2
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.1
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.4
+0.0
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.4
-0.5
-0.9
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
+0.3
-0.1
N.D.
growth on ypd
YPD
+0.1
-0.0
+0.5
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
+0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.5
-0.0
+0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
-0.1
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.3
+0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.1
+0.2
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
+0.1
+0.5
N.D.
auxotrophy
Dropout Complete
+0.0
+0.5
-0.1
+0.6
N.D.
auxotrophy
YNB Glucose
+0.3
+0.3
+0.0
+1.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
+0.1
+0.3
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.4
+0.3
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.6
-0.1
+1.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.8
+0.0
+0.7
N.D.
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