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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10076 and 10077 are separated by 551 nucleotides
10077 and 10078 are separated by 560 nucleotides
10078 and 10079 are separated by 319 nucleotides
10079 and 10080 are separated by 494 nucleotides
mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3,855 to 4,476
10076
mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5,028 to 7,438
10077
mRNA_1710: 10078 - Hypothetical Protein, at 7,999 to 8,750
10078
mRNA_1711: 10079 - K01887 RARS, argS arginyl-tRNA synthetase, at 9,070 to 11,520
10079
mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12,015 to 13,653
10080
Group
Condition
mRNA
_1708
mRNA
_1709
mRNA
_1710
mRNA
_1711
mRNA
_1712
10076
10077
10078
10079
10080
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.5
-0.9
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.5
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.0
-0.4
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.3
-0.1
N.D.
-0.1
growth on ypd
YPD
-0.0
+0.5
-0.6
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.2
-0.3
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
-0.4
N.D.
+0.4
growth on oleic acid
YNB Glucose
-0.3
+0.0
+0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
-0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
+0.6
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
+0.4
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.5
N.D.
+0.0
auxotrophy
Dropout Complete
+0.5
-0.1
+0.6
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.1
+1.2
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.3
+0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.0
+0.7
N.D.
-0.2
auxotrophy
YNB Glucose
+0.3
+0.0
+1.0
N.D.
+0.0
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