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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10079 and 10080 are separated by 494 nucleotides
10080 and 10081 are separated by 331 nucleotides
10081 and 10082 are separated by 326 nucleotides
10082 and 10083 are separated by 545 nucleotides
mRNA_1711: 10079 - K01887 RARS, argS arginyl-tRNA synthetase, at 9,070 to 11,520
10079
mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12,015 to 13,653
10080
mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13,985 to 15,656
10081
mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15,983 to 18,222
10082
mRNA_1715: 10083 - K18328 DBR1 lariat debranching enzyme, at 18,768 to 21,096
10083
Group
Condition
mRNA
_1711
mRNA
_1712
mRNA
_1713
mRNA
_1714
mRNA
_1715
10079
10080
10081
10082
10083
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.1
-0.3
N.D.
growth on ypd
YPD
N.D.
-0.1
-0.2
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.0
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.0
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.0
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
+0.0
+0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.1
+0.3
N.D.
auxotrophy
Dropout Complete
N.D.
-0.0
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.3
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+0.2
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
-0.0
+0.3
N.D.
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