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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10080 and 10081 are separated by 331 nucleotides
10081 and 10082 are separated by 326 nucleotides
10082 and 10083 are separated by 545 nucleotides
10083 and 10084 are separated by 306 nucleotides
mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12,015 to 13,653
10080
mRNA_1713: 10081 - KOG0022 Alcohol dehydrogenase, class III, at 13,985 to 15,656
10081
mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15,983 to 18,222
10082
mRNA_1715: 10083 - K18328 DBR1 lariat debranching enzyme, at 18,768 to 21,096
10083
mRNA_1716: 10084 - K14799 TSR1 pre-rRNA-processing protein TSR1, at 21,403 to 24,344
10084
Group
Condition
mRNA
_1712
mRNA
_1713
mRNA
_1714
mRNA
_1715
mRNA
_1716
10080
10081
10082
10083
10084
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.3
N.D.
N.D.
growth on ypd
YPD
-0.1
-0.2
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.3
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
+0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
+0.0
+0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
+0.2
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.0
+0.3
N.D.
N.D.
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