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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10085 and 10086 are separated by 306 nucleotides
10086 and 10087 are separated by 785 nucleotides
10087 and 10088 are separated by 639 nucleotides
10088 and 10089 are separated by 367 nucleotides
mRNA_1717: 10085 - HMMPfam-Per1-like-PF04080, at 24,723 to 26,291
10085
mRNA_1718: 10086 - HMMPfam-Cytochrome C oxidase copper chaperone (COX17)-PF05051,SUPERFAMILY--SSF47072, at 26,598 to 27,052
10086
mRNA_1719: 10087 - Hypothetical Protein, at 27,838 to 28,571
10087
mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29,211 to 32,060
10088
mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334
10089
Group
Condition
mRNA
_1717
mRNA
_1718
mRNA
_1719
mRNA
_1720
mRNA
_1721
10085
10086
10087
10088
10089
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.0
-0.1
-2.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
N.D.
+0.7
-0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.0
N.D.
+0.9
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-1.3
N.D.
+0.9
-0.5
-0.5
auxotrophy
Dropout Complete
-0.5
N.D.
+0.5
-0.1
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
+0.0
-0.3
-1.2
auxotrophy
YNB Glucose
-1.1
N.D.
+0.5
-0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.5
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
-0.3
-0.2
-1.0
growth on oleic acid
YNB Glucose
-0.9
N.D.
+0.8
-0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.8
N.D.
+0.2
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.4
-0.1
-0.2
growth on ypd
YPD
-0.3
N.D.
-0.0
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.3
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.8
N.D.
+0.7
+0.2
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.4
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.0
-0.5
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.4
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.0
-0.4
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
+0.4
-0.3
+0.6
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