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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10088 and 10089 are separated by 367 nucleotides
10089 and 10090 are separated by 540 nucleotides
10090 and 10091 are separated by 1264 nucleotides
10091 and 10092 are separated by 619 nucleotides
mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29,211 to 32,060
10088
mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334
10089
mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34,875 to 37,390
10090
mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38,655 to 42,471
10091
mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43,091 to 44,788
10092
Group
Condition
mRNA
_1720
mRNA
_1721
mRNA
_1722
mRNA
_1723
mRNA
_1724
10088
10089
10090
10091
10092
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-2.1
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.2
-0.0
+0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-1.1
-0.2
-0.0
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.7
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.0
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-0.5
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.7
-0.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.7
-0.1
+0.0
N.D.
growth on ypd
YPD
-0.1
-0.3
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose
-0.0
-0.4
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.3
-0.0
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.6
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.4
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.6
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.6
+0.2
+0.3
N.D.
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