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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10089 and 10090 are separated by 540 nucleotides
10090 and 10091 are separated by 1264 nucleotides
10091 and 10092 are separated by 619 nucleotides
10092 and 10093 are separated by 1908 nucleotides
mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334
10089
mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34,875 to 37,390
10090
mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38,655 to 42,471
10091
mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43,091 to 44,788
10092
mRNA_1725: 10093 - KOG2343 Glucose-repressible protein and related proteins, at 46,697 to 49,542
10093
Group
Condition
mRNA
_1721
mRNA
_1722
mRNA
_1723
mRNA
_1724
mRNA
_1725
10089
10090
10091
10092
10093
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.1
+0.2
-0.0
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
-0.0
+0.1
N.D.
-0.4
auxotrophy
Dropout Complete
-1.1
-0.2
-0.0
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
+0.0
+0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.7
-0.2
-0.2
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.1
+0.0
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.0
+0.0
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.5
-0.1
+0.1
N.D.
+0.1
growth on ypd
YPD
-0.3
+0.0
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.1
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.0
N.D.
+0.2
auxotrophy
YNB Glucose
-0.4
-0.1
+0.1
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.1
+0.3
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.1
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
-0.1
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.1
+0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.2
+0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.1
+0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
+0.4
N.D.
+1.3
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